You have mentioned you are using Applications Manager 64 bit in a Windows 64 bit server, however you did not highlight if you have downloaded 32 bit or 64 bit Jco files. Also can you install the Applications Manager in 'C:\Program Files\' instead of 'C:\Program Files (x86)\' as the later is used by 32 bit applications?
During the installation steps select 'C:\Program Files\ManageEngine\AppManager11\' as the path. Also you have to copy only 64 bit version of the SAP Jco files & corresponding dll files. Remove the files you copied in C:\WINDOWS\syswow64\ , that is used by 32 bit applications.
Please send us the files you have copied in below locations along with the support information file from Applications Manager.
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